Hello all,
Upon Installing AMBER 18 on a CPU cluster (intel) we are getting the
following error:
./configure intel worked fine.
This error occurred after few minutes of running command make install.
Error:
"/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(rdft2-pad.o): In function
`fftw_rdft2_pad':
rdft2-pad.c:(.text+0x56): undefined reference to `__intel_ssse3_rep_memcpy'
/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(rank0.o): In function
`apply_memcpy':
rank0.c:(.text+0x630): undefined reference to `__intel_ssse3_rep_memcpy'
/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(rank0.o): In function
`apply_memcpy_loop':
rank0.c:(.text+0x77a): undefined reference to `__intel_ssse3_rep_memcpy'
/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(rank0.o): In function
`memcpy_loop':
rank0.c:(.text+0x897): undefined reference to `__intel_ssse3_rep_memcpy'
/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(vrank3-transpose.o): In
function `apply_gcd':
vrank3-transpose.c:(.text+0xab): undefined reference to
`__intel_ssse3_rep_memcpy'
/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(vrank3-transpose.o):vrank3-transpose.c:(.text+0x14b):
more undefined references to `__intel_ssse3_rep_memcpy' follow
/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(vrank3-transpose.o): In
function `apply_toms513':
vrank3-transpose.c:(.text+0xea6): undefined reference to
`_intel_fast_memset'
vrank3-transpose.c:(.text+0xfce): undefined reference to
`__intel_ssse3_rep_memcpy'
vrank3-transpose.c:(.text+0xfed): undefined reference to
`__intel_ssse3_rep_memcpy'
vrank3-transpose.c:(.text+0x10fc): undefined reference to
`__intel_ssse3_rep_memcpy'
vrank3-transpose.c:(.text+0x1126): undefined reference to
`__intel_ssse3_rep_memcpy'
vrank3-transpose.c:(.text+0x1217): undefined reference to
`__intel_ssse3_rep_memcpy'
/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(vrank3-transpose.o):vrank3-transpose.c:(.text+0x1234):
more undefined references to `__intel_ssse3_rep_memcpy' follow
/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(trig.o): In function
`cexpl_sincos':
trig.c:(.text+0x17d): undefined reference to `__libm_sse2_sincos'
/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(trig.o): In function
`fftw_mktriggen':
trig.c:(.text+0x425): undefined reference to `__libm_sse2_sincos'
trig.c:(.text+0x539): undefined reference to `__libm_sse2_sincos'
/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(dht-rader.o): In function
`apply':
dht-rader.c:(.text+0xfc): undefined reference to `_intel_fast_memset'
/home1/midhunk16/AMBER18/amber18/lib/libfftw3.a(dht-rader.o): In function
`awake':
dht-rader.c:(.text+0x765): undefined reference to `_intel_fast_memset'
collect2: ld returned 1 exit status
make[2]: *** [/home1/midhunk16/AMBER18/amber18/bin/sander] Error 1
make[2]: Leaving directory
`/home1/midhunk16/AMBER18/amber18/AmberTools/src/sander'
make[1]: *** [serial] Error 2
make[1]: Leaving directory `/home1/midhunk16/AMBER18/amber18/AmberTools/src'
make: *** [install] Error 2"
Please look into this!
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Received on Wed Oct 10 2018 - 23:00:02 PDT
