Ok, problem solved.
I've made a typo with the 'hist' command.
Have a nice day!
Karolina
2018-07-31 10:28 GMT+02:00 Karolina Mitusińska (Markowska) <
markowska.kar.gmail.com>:
> Dear Amber Users,
>
> I've used cpptraj PCA tutorial to run PCA analysis of my system's
> trajectories.
> I've used
> hist All:1 All:2 bins 100 out all-sim-c0_hist_1_2.gnu norm name All_1_2
> to obtain the PC1 vs PC2 graph.
>
> I've used similar command to obtain the PC2 vs PC3 graph and I'm confused
> right now. Should the PCs be correlated or does that mean that I did
> something very wrong?
>
> I'm attaching both graphs.
>
> Thank you for your help!
> Best regards
> Karolina Mitusińska
> PhD student
>
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Received on Tue Jul 31 2018 - 06:30:02 PDT
