Hello everyone,
I'm running a simulation of a protein in membrane (explicit solvent). I
have a ASP residue that is located at the frontier between water and
membrane, and it is dynamically flipping from being embedded in the
membrane and facing the water. I would like to plot this property against
the time coordinate. Since I have no MM analysis background on this topic,
could you tell me what kind of analysis should/could I run (presumably with
cpptraj)?
Sorry for this trivial question..could you help me?
Elisa
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Jul 09 2018 - 06:30:04 PDT
