The error indicates something wrong with the command line syntax. What
was the exact command you were trying to execute?
-Dan
On Thu, May 10, 2018 at 12:14 PM, Jose Manuel Granadino Roldán
<jmroldan.ujaen.es> wrote:
> Hi amber users/developers,
>
> I have installed AmberTools18 downloading the install_ambertools.sh file and typing afterwards: bash install_ambertools.sh —prefix /programas/ -v 3. I am trying -v 3 because -v 2 gave me plenty of errors with parmed, MMPBSA.py y ante-MMPBSA.py. Now I am able to run parmed and ante-MMPBSA.py without any problem but when I try to execute MMPBSA.py I get the following error:
>
> File "/programas//amber18/bin/MMPBSA.py", line 71
> except CommandlineError, e:
> ^
> SyntaxError: invalid syntax
>
> Could you please give me a hint? I am quite lost now.
>
> Best
>
>
>
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Received on Thu May 10 2018 - 11:30:03 PDT
