Hi
You can use parmed (check amber manual).
i am using phone so can’t tell you the exact command, but the manual is a
good start.
Hai
On Wed, May 9, 2018 at 1:36 AM anu chandra <anu80125.gmail.com> wrote:
> Dear Amber users,
>
> I have generated a Amber compatible topology file for a system that
> contains protein and a bound-ligand. I wonder how to extract different
> information from the topology file to reconfirm the system parameters. For
> e.g., the ligand I am using posses total charge of +1e and, though I have
> used correct prep and frcmod file for generating .top file, I would like to
> reconfirm the total charge of the ligand in the generated .top file.
>
> Any help would be highly appreciated.
>
>
> Thanks in advance
> Anu
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Received on Tue May 08 2018 - 23:00:02 PDT
