You can use the impose command in leap to build a helical backbone. See the
manual for details.
On Sun, May 6, 2018, 2:53 AM roja rahmani <roja.rhmn.gmail.com> wrote:
> Hi,
>
> I want to have poly threonine(10 threonine) but in helix form and then add
> NME and ACE add terminals. I draw it in PYMOL but there are some problems
> in structure which is not identified by amber.
>
> Is there any way to have this molecule in helux form directly in amber? And
> extract its .prmtop aand .incprd file Would you please help me?
>
> Best regards
> -roja
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Received on Sun May 06 2018 - 06:30:02 PDT
