[AMBER] Poly amino acid helix form topology files

From: roja rahmani <roja.rhmn.gmail.com>
Date: Sun, 06 May 2018 06:53:31 +0000


I want to have poly threonine(10 threonine) but in helix form and then add
NME and ACE add terminals. I draw it in PYMOL but there are some problems
in structure which is not identified by amber.

Is there any way to have this molecule in helux form directly in amber? And
extract its .prmtop aand .incprd file Would you please help me?

Best regards
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Received on Sun May 06 2018 - 00:00:02 PDT
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