Re: [AMBER] Problem with g++ compiler with boost (AmberTools18)

From: Abdul-Rashid III Sampaco <absampaco.up.edu.ph>
Date: Thu, 26 Apr 2018 17:30:06 +0800

My system is on Linux Mint Cinnamon 18.3 Sylvia, a variant of Ubuntu 16.04.

I downloaded boost from the repo (apt-get), so I think I have the latest
version.

But, here's the output of ldconfig -p | grep boost_system:

    libboost_system.so.1.58.0 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/
libboost_system.so.1.58.0
    libboost_system.so (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/
libboost_system.so


Rashid

On Thu, Apr 26, 2018 at 7:23 AM, Stephan Schott <schottve.hhu.de> wrote:

> Thanks for trying. What version of Ubuntu and of the boost library do you
> have? It could also be that the version of boost related to the issue. Did
> you install it from the repo or manually? Maybe you can post the output of
> this (might need sudo):
> ldconfig -p | grep boost_system
>
>
> 2018-04-25 23:49 GMT+02:00 Abdul-Rashid III Sampaco <absampaco.up.edu.ph>:
>
> > I am using Ubuntu. I have all boost libraries installed. I'm still
> looking
> > trying to figure out this issue. Will let you guys know once i find it.
> >
> > Rashid
> >
> > On Thu, Apr 26, 2018 at 12:08 AM, Stephan Schott <schottve.hhu.de>
> wrote:
> >
> > > Hi,
> > > Probably you don't have all boost libraries required in order to
> compile
> > > memembed, most probably the boost_system lib. As David mentioned, make
> > sure
> > > that you installed the appropriate packages as stated in
> > > http://ambermd.org/Installation.php or see how to get this particular
> > > library installed. In the end, if you don't have boost installed
> > correctly,
> > > everything should work with the exception of the automated orientation
> of
> > > proteins into membranes in packmol-memgen (you can still use it with
> your
> > > own oriented structures from OPM for example).
> > >
> > > Please let us know if you found the cause of the issue.
> > >
> > > Best regards,
> > >
> > >
> > > --
> > > Stephan Schott Verdugo
> > > Biochemist
> > >
> > > Heinrich-Heine-Universitaet Duesseldorf
> > > Institut fuer Pharm. und Med. Chemie
> > > Universitaetsstr. 1
> > > 40225 Duesseldorf
> > > Germany
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Stephan Schott Verdugo
> Biochemist
>
> Heinrich-Heine-Universitaet Duesseldorf
> Institut fuer Pharm. und Med. Chemie
> Universitaetsstr. 1
> 40225 Duesseldorf
> Germany
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Apr 26 2018 - 03:00:02 PDT
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