Dear amber users,
I am totally new to membrane simulation.
I want to simulate a protein embedded bilayer system with applied
negative pressure (say
-100 bar). I have read from the literature that I can achieve this
either by semiisotropic pressure coupling where I can explicitly set
the pressure on xy plane as -100,
or by using surface tension coupling.
I am interested to go with the surface tension coupling. But I am not sure
how should I set the input parameters for achieving the required
pressure of -100 bar.
Moreover, what parameters do I need to validate post simulation?
Can Somebody please guide me in these regards?
Thanks a lot!
--
Debostuti Ghosh Dastidar
DST SERB National Post-Doctoral Fellow
Molecular Biophysics Unit
Indian Institute of Science, Bangalore
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Received on Thu Apr 26 2018 - 02:30:04 PDT
