[AMBER] QM/MM-MD charges

From: Thakur, Abhishek <axt651.miami.edu>
Date: Wed, 25 Apr 2018 15:38:17 +0000

Hi everyone,

I have done a QM/MM simulation for a reaction. Now after running the simulation and getting a transition state (TS) I want to know what is the charge associated with my nucleophile at the TS.


I have tried converting *.rst file to mol2 for the TS and final step and at both step I can find the same charge.

Is there any way that I can exactly get the charge of my TS nucleophile?


Any suggestion will be highly appreciated.


with regards,

-Abhishek
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Received on Wed Apr 25 2018 - 09:00:03 PDT
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