Hi,
I'm beginner in amber. I want to add NME and ACE terminals to zwitterionic
amino acid like threonine and then make an input topology file for
GROMACS(.itp file) to be compatible with (AMBER99 ff in) GROMACS.
I have tried many tutorials like(
http://sf.anu.edu.au/~vvv900/amber-tutorial/1cgh-nonstandard/) but
everytime i get confused in the middle because they are little different
from my need.
Could you please introduce me straightforward tutorial which is most
simmilar to my needs?( i use AMBERTOOLS17 and dont use desktop linux
because i connect with SSH).
Best regards
-Roja
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Received on Wed Apr 25 2018 - 06:00:07 PDT
