Re: [AMBER] ERROR TUTORIAL AMBER --- Step 3.3.3) "Visualizing the trajectories with VMD"

From: David A Case <david.case.rutgers.edu>
Date: Sat, 7 Apr 2018 11:02:11 -0400

On Fri, Apr 06, 2018, Edjan Silva wrote:

> I did all the tutorial steps, successfully. First I loaded the file "
> *polyAT_vac.prmtop*" and I determined the file type as "*AMBER7 Parm*".
> Then I loaded the file "*polyAT_vac_md1_12Acut.mdcrd"* and determined the
> file type as" *AMBER coordinates with periodic box* ". However, the number
> of frames that appears in the VMD is 0 (the correct one would be 1000
> frames). What went wrong? Attached my Input Files: polyAT_vac.prmtop
> polyAT_vac_md1_12Acut.mdcrd

There were no attachments. But try telling VMD that your trajectory
files in Amber NetCDF: that is now the default trajectory format.

....dac


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Received on Sat Apr 07 2018 - 08:30:03 PDT
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