[AMBER] Amber16 installation: Segmentation fault (core dumped) error when execute antechamber

From: Yuan Hu <Yuan.Hu.alkermes.com>
Date: Tue, 23 Jan 2018 00:03:01 +0000

Dear Amber Community,

I'm trying to install Amber16 with AmberTools17 with the following command.

./configure --python-install local --with-python /usr/bin/python2.7 gnu

My workstation is using Red Hat Enterprise Linux Server release 7.2 (Maipo).
No error messages during the installation step.
However, when I try to run antechamber, I got the following error:

$ antechamber
/usr/local/software/amber16/bin/antechamber: line 4: 19146 Segmentation fault (core dumped) $AMBERHOME/bin/to_be_dispatched/antechamber "$."

I further check all the programs compiled from folder: $AMBERHOME/AmberTools/src/antechamber/, and all of them don't work.
I didn't find a solution in the archives. Does anyone know how to solve this problem?

This message may contain confidential or privileged information. If you are not the intended recipient, please advise the sender immediately by reply e-mail and delete this message and any attachments without retaining a copy. Thank you for your cooperation.
AMBER mailing list
Received on Mon Jan 22 2018 - 16:30:03 PST
Custom Search