[AMBER] how to generate paramaters for GlcNH3

From: Tarsis <tarsis.ferreira.gmail.com>
Date: Tue, 5 Dec 2017 16:19:25 -0600

Dear Amber users,

I would like to generate parameters for an oligosaccharide containing
GlcNH3 instead of GlcNAc.

I've tried to generate the prepc file containing the mainchain for the C1
and O4 head/tail info as well and the mainchain but when I tried to build a
disaccharide using m = sequence { 4ZB MOL } I get a mismatch atom error.

Is there a simpler way of doing this? Maybe building the whole
hexasaccharide as one ligand?

Thanks in advance, 
-- 
Tarsis Gesteira
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Received on Tue Dec 05 2017 - 14:30:02 PST
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