Did it run for any length of time? Was the cpu busy? Was there any other
output?
On 11/13/17 4:22 AM, Rana Rehan Khalid wrote:
> yes sir program is stop.
>
> On Mon, Nov 13, 2017 at 4:33 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
>> Do you see the cpu in use from the program?
>>
>> $ top
>>
>> Bill
>>
>>
>> On 11/13/17 3:32 AM, Rana Rehan Khalid wrote:
>>> No its not stop . One maybe issue i am not sure that I ran the simulation
>>> on amber 14 which is install on our cluster while in my laptop it is
>> amber
>>> 17 and I start analysis on my laptop. Thanks
>>>
>>> On Mon, Nov 13, 2017 at 4:26 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>>>
>>>> Did the program stop? Was there any other output?
>>>>
>>>> Bill
>>>>
>>>>
>>>> On 11/13/17 3:24 AM, Rana Rehan Khalid wrote:
>>>>> Dear Amber users
>>>>>
>>>>> I am facing this error. I have just started the analysis on my mdcrd
>>>> files
>>>>> and face this issue kindly guide how can i resolve it. I already run
>> the
>>>> 20
>>>>> ns simulation and now start its analysis when i open the first file
>> these
>>>>> warning messages show.
>>>>>
>>>>> parm bay.prmtop
>>>>> Reading 'bay.prmtop' as Amber Topology
>>>>> Radius Set: modified Bondi radii (mbondi)
>>>>>> trajin md1.mdcrd.gz
>>>>> Reading 'md1.mdcrd.gz' as Amber Trajectory
>>>>> Warning: md1.mdcrd.gz: Number of frames in compressed traj could not be
>>>>> determined.
>>>>> Warning: Frames will be read until EOF.
>>>>>> list
>>>>> trajin
>>>>>
>>>>>
>>>>> INPUT TRAJECTORIES (1 total):
>>>>> 0: 'md1.mdcrd.gz' is an AMBER trajectory, Parm bay.prmtop
>> (Orthogonal
>>>>> box), unknown #frames, start=0 offset=1
>>>>> Total number of frames is unknown.
>>>>>
>>>>> Regards
>>>>> _______________________________________________
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Received on Mon Nov 13 2017 - 04:30:03 PST
