[AMBER] force field for xylose

From: Osman, Roman <roman.osman.mssm.edu>
Date: Sun, 12 Nov 2017 19:58:34 +0000


I am trying to simulate xylose inside a protein. So far all my searches of a xylose force field in amber yielded a xylose (in various conformations) as a unit to be attached to some other molecule. For example 0XA has a C1 with only one H to be able to connect to another unit through C1.
Is there a force field for a complete xylose molecule or is there a way to add the hydrogen to C1 in a simple way?

Thanks for your help.

Roman Osman
Department of Pharmacological Sciences
Mount Sinai School of Medicine
New York, NY 10029
(212) 659-8627

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Received on Sun Nov 12 2017 - 12:00:02 PST
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