Dear Amber Users,
I have used the Pdb file generated from xleap to generate the molecule
PF6-. After this i have run antechamber with the command as
antechamber -i pf6.pdb -fi pdb -o pf6.mol2 -fo mol2
This gives an error message
For atom[1]:P1, the best APS is not zero, bonds involved by this atom are
frozen
The frozen atom type can only be 1, 2, 3, 7 (aromatic single), 8 (aromatic
double)Error: cannot run "/home/shilpa/AMBER/amber12/bin/bondtype -j full
-i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac" in
judgebondtype() of antechamber.c properly, exit
Thanks in advance.
Shilpa Gupta
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Received on Wed Nov 01 2017 - 08:00:03 PDT
