This is the restart file generated after running 5ns simulation using
ntxo=0 and ioutfm=1.
Now, I am restarting the simulation further using this restart file.
On Mon, Oct 16, 2017 at 12:01 PM, Leena Aggarwal <leena.hrc.gmail.com>
wrote:
> This is the restart file generated after running 5ns simulation using
> ntxo=0 and ioutfm=1.
> Now, I am restarting the simulation further using this restart file.
>
> On Mon, Oct 16, 2017 at 11:55 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>
>> What does
>>
>> $ file amyl_prod11.rst
>>
>> give?
>>
>>
>> On 10/15/17 11:23 PM, Leena Aggarwal wrote:
>> > I have checked many times but I think it was not able to read the
>> restart
>> > file in netcdf format
>> >
>> > On Mon, Oct 16, 2017 at 11:48 AM, Bill Ross <ross.cgl.ucsf.edu> wrote:
>> >
>> >> Looking at how it ends:
>> >>
>> >> getting new box info from bottom of inpcrd
>> >> | INFO: Old style inpcrd file read
>> >>
>> >> This indicates that a netcdf file was not detected. Check your run args
>> >> to sander.
>> >>
>> >>
>> >> On 10/15/17 11:15 PM, Leena Aggarwal wrote:
>> >>> I have attached the output file.
>> >>>
>> >>> On Mon, Oct 16, 2017 at 11:39 AM, Bill Ross <ross.cgl.ucsf.edu>
>> wrote:
>> >>>
>> >>>> Are you submitting jobs to a batch system? How does the output file
>> end?
>> >>>>
>> >>>>
>> >>>> On 10/15/17 11:07 PM, Leena Aggarwal wrote:
>> >>>>> Output file has been made but no error in the output file
>> >>>>>
>> >>>>> On Mon, Oct 16, 2017 at 11:18 AM, Bill Ross <ross.cgl.ucsf.edu>
>> wrote:
>> >>>>>
>> >>>>>> Are you submitting jobs to a batch system? If so, see if any
>> output is
>> >>>>>> being captured by it into some file.
>> >>>>>>
>> >>>>>>
>> >>>>>> On 10/15/17 10:46 PM, Leena Aggarwal wrote:
>> >>>>>>> It is not giving any error that why it s not running but it is not
>> >>>>>> running
>> >>>>>>> On Mon, Oct 16, 2017 at 11:08 AM, Bill Ross <ross.cgl.ucsf.edu>
>> >> wrote:
>> >>>>>>>> Did you try searching google for the error msg?
>> >>>>>>>>
>> >>>>>>>>
>> >>>>>>>> On 10/15/17 10:37 PM, Leena Aggarwal wrote:
>> >>>>>>>>> yes
>> >>>>>>>>>
>> >>>>>>>>> On Mon, Oct 16, 2017 at 10:59 AM, Bill Ross <ross.cgl.ucsf.edu>
>> >>>> wrote:
>> >>>>>>>>>> Same error each way?
>> >>>>>>>>>>
>> >>>>>>>>>>
>> >>>>>>>>>> On 10/15/17 10:26 PM, Leena Aggarwal wrote:
>> >>>>>>>>>>> ntx=4 or 5 or 6, with all it is giving error.
>> >>>>>>>>>>>
>> >>>>>>>>>>> On Mon, Oct 16, 2017 at 10:42 AM, Bill Ross <
>> ross.cgl.ucsf.edu>
>> >>>>>> wrote:
>> >>>>>>>>>>>> This is what the manual is telling me:
>> >>>>>>>>>>>>
>> >>>>>>>>>>>> ntx Option to read the initial coordinates, velocities and
>> box
>> >>>> size
>> >>>>>>>> from
>> >>>>>>>>>>>> the inpcrd file. Option 1 must be used when one is starting
>> from
>> >>>>>>>>>>>> minimized or model-built coordinates. If an MD restrt file is
>> >> used
>> >>>>>> as
>> >>>>>>>>>>>> inpcrd, then option 5 is generally used (unless you
>> explicitly
>> >>>> wish
>> >>>>>> to
>> >>>>>>>>>>>> ignore the velocities that are present). = 1 (default)
>> >>>> Coordinates,
>> >>>>>>>> but
>> >>>>>>>>>>>> no velocities, will be read; either formatted (ASCII) files
>> or
>> >>>>>> NetCDF
>> >>>>>>>>>>>> files can be used, as the input file type will be
>> auto-detected.
>> >>>> = 5
>> >>>>>>>>>>>> Coordinates and velocities will be read from either a NetCDF
>> or
>> >> a
>> >>>>>>>>>>>> formatted (ASCII) coordinate file. Box information will be
>> read
>> >> if
>> >>>>>>>> ntb >
>> >>>>>>>>>>>> 0. The velocity information will only be used if irest = 1
>> (see
>> >>>>>>>> below).
>> >>>>>>>>>>>> On 10/15/17 10:06 PM, Leena Aggarwal wrote:
>> >>>>>>>>>>>>> Can you suggest me how to read the restart file in netcdf
>> >> format.
>> >>>>>>>>>>>>> Do I need to change ntx=6
>> >>>>>>>>>>>>> or do I need to change the file usage of sander i.e, -c or
>> -y
>> >>>>>>>>>>>>>
>> >>>>>>>>>>>>> On Mon, Oct 16, 2017 at 10:11 AM, Bill Ross <
>> ross.cgl.ucsf.edu
>> >>>>>>>> wrote:
>> >>>>>>>>>>>>>> Read restrt in netcdf format. Also visualize the mdcrd
>> file,
>> >> to
>> >>>>>> see
>> >>>>>>>> if
>> >>>>>>>>>>>>>> anything went wrong.
>> >>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>
>> >>>>>>>>>>>>>> On 10/15/17 9:38 PM, Leena Aggarwal wrote:
>> >>>>>>>>>>>>>>> After running the simulation, the restart file is now in
>> >> binary
>> >>>>>> cdf
>> >>>>>>>>>>>>>> format.
>> >>>>>>>>>>>>>>> So, do we need to convert the restart file in ASCII format
>> >> and
>> >>>>>> then
>> >>>>>>>>>>>>>> submit
>> >>>>>>>>>>>>>>> the further simulation. Or, do we need the changes in the
>> >>>>>>>>>>>> production.in
>> >>>>>>>>>>>>>>> file so that it will read the restart file in netcdf
>> format,
>> >>>> i.e,
>> >>>>>>>>>> ntx=6
>> >>>>>>>>>>>>>>> along with ntxo=0 and ioutfm=1
>> >>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>> On Fri, Oct 13, 2017 at 1:31 PM, Elvis Martis <
>> >>>>>>>>>> elvis.martis.bcp.edu.in
>> >>>>>>>>>>>>>>> wrote:
>> >>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>> Fingers crossed
>> >>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>> Best Regards
>> >>>>>>>>>>>>>>>> Elvis Martis
>> >>>>>>>>>>>>>>>> Mumbai, INDIA.
>> >>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>> ________________________________________
>> >>>>>>>>>>>>>>>> From: Leena Aggarwal <leena.hrc.gmail.com>
>> >>>>>>>>>>>>>>>> Sent: 13 October 2017 11:19
>> >>>>>>>>>>>>>>>> To: AMBER Mailing List
>> >>>>>>>>>>>>>>>> Subject: Re: [AMBER] query regarding the restart file of
>> >>>>>> molecular
>> >>>>>>>>>>>>>>>> dynamics simulation
>> >>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>> Right now, it is running. The restart file is in NetCDF
>> >>>> format.
>> >>>>>>>>>>>>>>>> On Thu, Oct 12, 2017 at 7:29 PM, Elvis Martis <
>> >>>>>>>>>>>> elvis.martis.bcp.edu.in>
>> >>>>>>>>>>>>>>>> wrote:
>> >>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>> DO you still get that error??
>> >>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>> Best Regards
>> >>>>>>>>>>>>>>>>> Elvis Martis
>> >>>>>>>>>>>>>>>>> Mumbai, INDIA.
>> >>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>> ________________________________________
>> >>>>>>>>>>>>>>>>> From: Leena Aggarwal <leena.hrc.gmail.com>
>> >>>>>>>>>>>>>>>>> Sent: 12 October 2017 17:42
>> >>>>>>>>>>>>>>>>> To: AMBER Mailing List
>> >>>>>>>>>>>>>>>>> Subject: Re: [AMBER] query regarding the restart file of
>> >>>>>>>> molecular
>> >>>>>>>>>>>>>>>>> dynamics simulation
>> >>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>> Now, I am saving the restart files in netcdf format.
>> >>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>> On Thu, Oct 12, 2017 at 2:41 PM, Bill Ross <
>> >>>> ross.cgl.ucsf.edu>
>> >>>>>>>>>>>> wrote:
>> >>>>>>>>>>>>>>>>>> Were there any messages about vlimit being exceeded in
>> >>>> mdout?
>> >>>>>>>>>>>>>>>>>> If the numbers that overflow into *****'s are
>> relatively
>> >>>> few,
>> >>>>>>>> you
>> >>>>>>>>>>>>>> might
>> >>>>>>>>>>>>>>>>>> be able to figure which atoms are the prime suspects,
>> look
>> >>>> at
>> >>>>>>>> the
>> >>>>>>>>>>>> last
>> >>>>>>>>>>>>>>>>>> valid coordinates, and begin to speculate what went
>> wrong.
>> >>>>>>>>>> However,
>> >>>>>>>>>>>> I
>> >>>>>>>>>>>>>>>>>> would try saving to netcdf format to prevent overflow,
>> and
>> >>>>>>>>>> rerunning
>> >>>>>>>>>>>>>>>>>> while saving to mdcrd frequently, then visualize the
>> >>>>>> trajectory
>> >>>>>>>> to
>> >>>>>>>>>>>>>> more
>> >>>>>>>>>>>>>>>>>> easily see where the problem starts.
>> >>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>> On 10/12/17 2:00 AM, Leena Aggarwal wrote:
>> >>>>>>>>>>>>>>>>>>> Yes, I have plotted and the energy, temperature have
>> >>>>>>>> equilibrated
>> >>>>>>>>>>>>>>>>>> properly.
>> >>>>>>>>>>>>>>>>>>> On Thu, Oct 12, 2017 at 9:57 AM, Bill Ross <
>> >>>>>> ross.cgl.ucsf.edu>
>> >>>>>>>>>>>>>>>> wrote:
>> >>>>>>>>>>>>>>>>>>>> Have you plotted and assessed them? Any conclusions?
>> >>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>> On 10/11/17 9:24 PM, Leena Aggarwal wrote:
>> >>>>>>>>>>>>>>>>>>>>> I am attaching the files of energy, temperature and
>> >>>>>> pressure.
>> >>>>>>>>>>>>>>>>>>>>> On Wed, Oct 11, 2017 at 11:01 PM, Bill Ross <
>> >>>>>>>> ross.cgl.ucsf.edu
>> >>>>>>>>>>>>>>>>> wrote:
>> >>>>>>>>>>>>>>>>>>>>>> Have you plotted energy, temperature etc yet?
>> >>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>> On 10/11/17 12:11 AM, Leena Aggarwal wrote:
>> >>>>>>>>>>>>>>>>>>>>>>> There were no ************ at all in mdout ,
>> mdcrd
>> >> and
>> >>>>>>>> mdrst
>> >>>>>>>>>>>>>>>>> before
>> >>>>>>>>>>>>>>>>>>>> ~95
>> >>>>>>>>>>>>>>>>>>>>>> ns.
>> >>>>>>>>>>>>>>>>>>>>>>> ********* come in only the restart file after 95
>> ns.
>> >>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>> On Wed, Oct 11, 2017 at 12:39 PM, Leena Aggarwal <
>> >>>>>>>>>>>>>>>>>> leena.hrc.gmail.com>
>> >>>>>>>>>>>>>>>>>>>>>>> wrote:
>> >>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>> ************** comes in the output coordinate
>> file
>> >>>> after
>> >>>>>>>>>>>>>>>>> simulation
>> >>>>>>>>>>>>>>>>>>>> run
>> >>>>>>>>>>>>>>>>>>>>>> of
>> >>>>>>>>>>>>>>>>>>>>>>>> ~95 ns
>> >>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>> On Wed, Oct 11, 2017 at 12:33 PM, Leena Aggarwal
>> <
>> >>>>>>>>>>>>>>>>>> leena.hrc.gmail.com
>> >>>>>>>>>>>>>>>>>>>>>>>> wrote:
>> >>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>> I have not plotted but there are no
>> ************ in
>> >>>> the
>> >>>>>>>>>>>> output
>> >>>>>>>>>>>>>>>>>>>>>> coordinate
>> >>>>>>>>>>>>>>>>>>>>>>>>> file.
>> >>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>> On Wed, Oct 11, 2017 at 11:35 AM, Bill Ross <
>> >>>>>>>>>>>> ross.cgl.ucsf.edu
>> >>>>>>>>>>>>>>>>>>>> wrote:
>> >>>>>>>>>>>>>>>>>>>>>>>>>> Have you plotted temperature, pressure,
>> energies
>> >> and
>> >>>>>> the
>> >>>>>>>>>>>> like,
>> >>>>>>>>>>>>>>>>> to
>> >>>>>>>>>>>>>>>>>>>> see
>> >>>>>>>>>>>>>>>>>>>>>>>>>> how well-equilibrated the system is?
>> >>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>> Are there any *****'s in the .out files?
>> >>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>> On 10/10/17 9:17 PM, Leena Aggarwal wrote:
>> >>>>>>>>>>>>>>>>>>>>>>>>>>> I am attaching the input files of
>> equilibration.
>> >>>> The
>> >>>>>>>>>> number
>> >>>>>>>>>>>>>>>> of
>> >>>>>>>>>>>>>>>>>>>> atoms
>> >>>>>>>>>>>>>>>>>>>>>>>>>> in the
>> >>>>>>>>>>>>>>>>>>>>>>>>>>> system is around 98055. I have done the
>> heating
>> >>>> from
>> >>>>>> 0
>> >>>>>>>> to
>> >>>>>>>>>>>>>>>> 300K
>> >>>>>>>>>>>>>>>>>> for
>> >>>>>>>>>>>>>>>>>>>>>> 100
>> >>>>>>>>>>>>>>>>>>>>>>>>>> ps
>> >>>>>>>>>>>>>>>>>>>>>>>>>>> in NVT ensemble using Langevin thermostat.
>> Then I
>> >>>>>> have
>> >>>>>>>>>>>>>>>>>> equilibrated
>> >>>>>>>>>>>>>>>>>>>>>> the
>> >>>>>>>>>>>>>>>>>>>>>>>>>>> system for 5 ns before production.
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>> On Tue, Oct 10, 2017 at 8:35 PM, Bill Ross <
>> >>>>>>>>>>>>>>>> ross.cgl.ucsf.edu>
>> >>>>>>>>>>>>>>>>>>>>>> wrote:
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> How long did you equilibrate before
>> production?
>> >>>> Best
>> >>>>>>>> to
>> >>>>>>>>>>>> send
>> >>>>>>>>>>>>>>>>>> those
>> >>>>>>>>>>>>>>>>>>>>>> .in
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> files too.
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> Bill
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> On 10/10/17 6:47 AM, Leena Aggarwal wrote:
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>> I am attaching the input protocol file or
>> >>>>>> production
>> >>>>>>>>>> run
>> >>>>>>>>>>>>>>>>> input
>> >>>>>>>>>>>>>>>>>>>>>> file.
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>> On Tue, Oct 10, 2017 at 6:39 PM, Elvis
>> Martis <
>> >>>>>>>>>>>>>>>>>>>>>>>>>> elvis.martis.bcp.edu.in>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>> wrote:
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> HI,
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Can you also send you input protocol file?
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Best Regards
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Elvis Martis
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Mumbai, INDIA.
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ________________________________________
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> From: Leena Aggarwal <leena.hrc.gmail.com>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Sent: 10 October 2017 18:10
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> To: amber.ambermd.org
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Subject: [AMBER] query regarding the
>> restart
>> >>>> file
>> >>>>>> of
>> >>>>>>>>>>>>>>>>> molecular
>> >>>>>>>>>>>>>>>>>>>>>>>>>> dynamics
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> simulation
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> I am getting '********************' in the
>> >>>> restart
>> >>>>>>>>>> file.
>> >>>>>>>>>>>>>>>> So,
>> >>>>>>>>>>>>>>>>>>>> while
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> resubmitting the simulation it is showing
>> the
>> >>>>>> error
>> >>>>>>>> :
>> >>>>>>>>>>>>>>>>> "getting
>> >>>>>>>>>>>>>>>>>>>> new
>> >>>>>>>>>>>>>>>>>>>>>>>>>> box
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> info
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> from bottom of inpcrd
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> INFO : old style inpcrd file read".
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> "************" error in restart file.
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ************-392.8431438
>> >>>>>>>> 141.4329232************-393.
>> >>>>>>>>>>>>>>>>> 5314779
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> 142.1394832
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ************-392.6209402 141.4041265
>> >> 512.3461308
>> >>>>>>>>>>>>>>>> -57.5257819
>> >>>>>>>>>>>>>>>>>>>>>>>>>> 296.9723761
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> 559.7273926-176.5667776*******
>> >> *****
>> >>>>>>>>>>>>>>>>>>>>>>>>>> 560.1020382-176.1418198*******
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> *****
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> 559.0035464-175.9871851*******
>> >> *****
>> >>>>>>>>>> 156.3070715
>> >>>>>>>>>>>>>>>>>>>> 146.8340440
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> 417.5014573
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> 155.9575107
>> >>>>>> 183.8644124-287.7859939*******
>> >>>>>>>>>> *****
>> >>>>>>>>>>>>>>>>>>>> 128.6822810
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> -44.4453453
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ************ 127.7639674
>> >> -44.0672594************
>> >>>>>>>>>>>>>>>> 128.8132441
>> >>>>>>>>>>>>>>>>>>>>>>>>>> -44.7128400
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ______________________________
>> >> _________________
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> http://lists.ambermd.org/
>> >> mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ______________________________
>> >> _________________
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> http://lists.ambermd.org/
>> >> mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ______________________________
>> >> _________________
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> http://lists.ambermd.org/
>> >> mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> ______________________________
>> _________________
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> http://lists.ambermd.org/mailm
>> an/listinfo/amber
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> ______________________________
>> _________________
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>>>>>>>>>>>> http://lists.ambermd.org/mailm
>> an/listinfo/amber
>> >>>>>>>>>>>>>>>>>>>>>>>>>> ______________________________
>> _________________
>> >>>>>>>>>>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>>>>>>>>>> http://lists.ambermd.org/mailm
>> an/listinfo/amber
>> >>>>>>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>>>>
>> >>>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>>>
>> >>>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>>>
>> >>>>>>>>>>> _______________________________________________
>> >>>>>>>>>>> AMBER mailing list
>> >>>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>> _______________________________________________
>> >>>>>>>>>> AMBER mailing list
>> >>>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>>>
>> >>>>>>>>> _______________________________________________
>> >>>>>>>>> AMBER mailing list
>> >>>>>>>>> AMBER.ambermd.org
>> >>>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>> _______________________________________________
>> >>>>>>>> AMBER mailing list
>> >>>>>>>> AMBER.ambermd.org
>> >>>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>>>
>> >>>>>>> _______________________________________________
>> >>>>>>> AMBER mailing list
>> >>>>>>> AMBER.ambermd.org
>> >>>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>> _______________________________________________
>> >>>>>> AMBER mailing list
>> >>>>>> AMBER.ambermd.org
>> >>>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>>>
>> >>>>> _______________________________________________
>> >>>>> AMBER mailing list
>> >>>>> AMBER.ambermd.org
>> >>>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>> _______________________________________________
>> >>>> AMBER mailing list
>> >>>> AMBER.ambermd.org
>> >>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >>>>
>> >>>>
>> >>>>
>> >>>> _______________________________________________
>> >>>> AMBER mailing list
>> >>>> AMBER.ambermd.org
>> >>>> http://lists.ambermd.org/mailman/listinfo/amber
>> >> _______________________________________________
>> >> AMBER mailing list
>> >> AMBER.ambermd.org
>> >> http://lists.ambermd.org/mailman/listinfo/amber
>> >>
>> > _______________________________________________
>> > AMBER mailing list
>> > AMBER.ambermd.org
>> > http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Oct 16 2017 - 04:00:01 PDT
