Can you please tell how to align the peptide chain side by side so that
they can form hydrogen bond.
On 02-Aug-2017 10:56 PM, "Hai Nguyen" <nhai.qn.gmail.com> wrote:
I think you need them connect via natural hbond or you need to create
restraints in your simulation.
On Wed, Aug 2, 2017 at 12:32 PM Rajarshi Roy <phd1701171011.iiti.ac.in>
wrote:
> Hi
> No. I want to create hydrogen bond between two peptide chain. And also i
> want to create array peptide chain like beta strand
>
> On 02-Aug-2017 9:59 PM, "Hai Nguyen" <nhai.qn.gmail.com> wrote:
>
> > Yes. tleap can add hydrogen and missing atoms
> >
> > Hai
> >
> > On Wed, Aug 2, 2017 at 10:51 AM Rajarshi Roy <phd1701171011.iiti.ac.in>
> > wrote:
> >
> > > Hi,
> > > I created a modified short peptide and want to create beta
strand
> > > like structure of 3-8 residue.I build that modified peptide using
> > > avogadro. How can I create hydrogen bond between that peptide to 3 to
> 8
> > > array of that?
> > > Can it be done using amber or other.?
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Received on Wed Aug 02 2017 - 22:00:04 PDT
