Re: [AMBER] "Length of coordinates and ESP charges are different" in MCPB.py -s3

From: Pengfei Li <ambermailpengfei.gmail.com>
Date: Mon, 31 Jul 2017 16:29:46 -0500

Hi Eugene,

The error is related to your Gaussian output file of the large model. Did you use Gaussian09 to perform the calculation? And did you specify that (using “software_version” keyword) in your MCPB.py input file?

Kind regards,
Pengfei

> On Jul 31, 2017, at 5:59 AM, Eugene Cha <eugenekhcha.gmail.com> wrote:
>
> I get the following error during step 3 of MCPB.py
>
> How do I address this issue?
>
> Thank you so much for your time and advice
>
>
> Eugene
>
>
>
>
> ******************************************************************
>
> * *
>
> *======================RESP Charge fitting=======================*
>
> * *
>
> ******************************************************************
>
> ***Generating the 1st stage resp charge fitting input file...
>
> ***Generating the 2nd stage resp charge fitting input file...
>
> ***Doing the RESP charge fiting...
>
> Traceback (most recent call last):
>
> File "/Users/eugenecha/anaconda3/bin/MCPB.py", line 684, in <module>
>
> premol2fs, mcresname, 1, chgfix_resids, g0x, lgchg)
>
> File
> "/Users/eugenecha/anaconda3/lib/python3.6/site-packages/pymsmt/mcpb/resp_fitting.py",
> line 441, in resp_fitting
>
> get_esp_from_gau(mklogf, espf)
>
> File
> "/Users/eugenecha/anaconda3/lib/python3.6/site-packages/pymsmt/mol/gauio.py",
> line 692, in get_esp_from_gau
>
> raise pymsmtError("The length of coordinates and ESP charges are
> different!")
>
> pymsmt.exp.pymsmtError: The length of coordinates and ESP charges are
> different!
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Received on Mon Jul 31 2017 - 15:00:02 PDT
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