Hi,
I'd urge you to update AmberTools to the current version 17.
There are tutorials for doing RMSD analysis with CPPTRAJ here:
http://ambermd.org/tutorials/#analysis
-Christina
On Mon, Jul 31, 2017 at 10:35 AM, Mustafa Alhaji Isa <
mustafaisa.unimaid.edu.ng> wrote:
> Dear all
>
> What command and file script should I use to calculate RMSD and RMSF
> in amber10 using cpptraj
>
> --
> Warm regards
>
>
> Mustafa Alhaji Isa
> Bioinformatics and Computational BIology Lab,
> Department of Biotechnology,
> School of Engineering and Technology
> Sharda University
> Greater Noida, Delhi, India
> Mob No.: +918800621829
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
--------------------------------------------------------------
Christina Bergonzo
Research Chemist
NIST/IBBR NRC Postdoctoral Researcher
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Received on Mon Jul 31 2017 - 08:00:03 PDT
