Dear Yogeeshwar
Thanks a lot.
Debostuti
On Fri, Jul 28, 2017 at 12:07 PM, Yogeeshwar Ajjugal <
bo14resch11004.iith.ac.in> wrote:
> Hi,
> For the methodology used to build nucleic acid models through 3D-NuS (
> http://iith.ac.in/3dnus/), please refer:
>
> 3D-NuS: A Web Server for Automated Modeling and Visualization of
> Non-Canonical 3-Dimensional Nucleic Acid Structures.
> <https://www.ncbi.nlm.nih.gov/pubmed/28652006>
>
> Patro LPP, Kumar A, Kolimi N, *Rathinavelan* T.
>
> J Mol Biol. 2017 Jun 23. pii: S0022-2836(17)30314-5. doi:
> 10.1016/j.jmb.2017.06.013.
>
>
>
>
> *Thanks & Regards,*
>
> *Yogeeshwar Ajjugal*
>
> *Ph.D ScholarC/O Dr.Thenmalarchelvi Rathinavelan*
>
>
> *Dept Of Biotechnology,Indian Institute of Technology Hyderabad,*
> *Kandi, Medak-502285.*
>
> On Fri, Jul 28, 2017 at 11:42 AM, Yogeeshwar Ajjugal <
> bo14resch11004.iith.ac.in> wrote:
>
> > Hi,
> > 3D-NuS (http://iith.ac.in/3dnus/) has the facility of creating steric
> > free and energy minimized DNA structures with mutated/mismatch base
> pairs.
> > It also facilitates modeling non-canonical nucleic acid structures like
> > RNA/DNA duplexes with mis-match base pairs, DNA/RNA chimeras, triplexes
> and
> > G-quadruplexes.
> >
> > Regards.
> > Yoogi
> >
> > *Thanks & Regards,*
> >
> > *Yogeeshwar Ajjugal*
> >
> > *Ph.D ScholarC/O Dr.Thenmalarchelvi Rathinavelan*
> >
> >
> > *Dept Of Biotechnology,Indian Institute of Technology Hyderabad,*
> > *Kandi, Medak-502285.*
> >
> > On Thu, Jul 27, 2017 at 5:42 PM, Debostuti Ghoshdastidar <
> > debostutighosh.gmail.com> wrote:
> >
> >> Dear Amber Users
> >>
> >> I have an existing DNA/protein pdb and need to mutate the DNA at
> multiple
> >> base pairs. Is it possible to do so using the NAB utility?
> Alternatively,
> >> can I add nucleic acid bases to an existing DNA structure?
> >>
> >> Any suggestions would be helpful.
> >>
> >> Thank you
> >>
> >> --
> >> Debostuti Ghosh Dastidar
> >> DST SERB National Post-Doctoral Fellow
> >> Molecular Biophysics Unit
> >> Indian Institute of Science, Bangalore
> >> _______________________________________________
> >> AMBER mailing list
> >> AMBER.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber
> >>
> >
> >
> _______________________________________________
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>
--
Debostuti Ghosh Dastidar
DST SERB National Post-Doctoral Fellow
Molecular Biophysics Unit
Indian Institute of Science, Bangalore
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Received on Fri Jul 28 2017 - 00:00:05 PDT
