[AMBER] Is it possible to align frames?

From: Elisa Pieri <elisa.pieri90.gmail.com>
Date: Mon, 24 Jul 2017 21:59:17 +0200

Hello,

I have a curiosity: I have a nc trajectory obtained from REMD, so the
frames are actually not-consecutive snapshots. Is there a tool to align the
protein from frame to frame?

I'm performing cluster analysis on it, and would like to be sure that this
issue is not a problem in calculating RMS and average structures. Right
now, average structures are completely unrealistic.

Suggestions?

Elisa
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Received on Mon Jul 24 2017 - 13:00:03 PDT
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