Re: [AMBER] Functions in NAB

From: Akshar Sharma <sarojakshar.gmail.com>
Date: Fri, 21 Jul 2017 23:48:14 +0530

If it helps, I have only a regular pdb file of the single residues, without
any bnd files or other information

On Fri, Jul 21, 2017 at 11:44 PM, Akshar Sharma <sarojakshar.gmail.com>
wrote:

> I did try that, but it seems that in order to use addresidue() , I would
> have to define a residue library for my special residues in the directory
> $AMBERHOME/dat/reslib which I'm not sure how to do...
> Is there any way to use addresidue without doing this?
> Otherwise, how do I define a residue library (is there any book or website
> that could teach me how to?)
>
> Thank you!
>
>
> On Fri, Jul 21, 2017 at 6:33 PM, David Case <david.case.rutgers.edu>
> wrote:
>
>> On Fri, Jul 21, 2017, Akshar Sharma wrote:
>>
>> > I created pdb files of the special residues that I am using, and I use:
>> > m1=getpdb("filename.pdb");
>> > mergestr(m,"sense","last",m1,"A","first");
>>
>> I think you want to be using addresidue() here, not mergestr(). But it's
>> been
>> a long time since I've done this.
>>
>> ....dac
>>
>>
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>
>
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Received on Fri Jul 21 2017 - 11:30:04 PDT
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