What was the input you gave to sander (or pmemd)? What was the command
line you used to execute the program?
-Dan
On Wed, Jul 19, 2017 at 3:48 PM, Parthiban Marimuthu <mparthib.gmail.com> wrote:
> Dear Amber users,
>
> I am resubmitting the my query again as it was not discussed.
>
> I am trying to plot phi_psi dihedral angles using the python reweighting
> script from the following tutorial.
> http://ambermd.org/tutorials/advanced/tutorial22/section3.htm
>
> The reweighting tutorial explains that creating a weights.dat file from
> amd.log file.
>
> I followed both cMD & aMD using Amber16 individually from which I see there
> is NO log file created for some reason.
> All i have is .out, .rst and .nc files only.
> As the tutorial explains, .log file is the starting file to create
> weights.dat file, i cannot proceed further.
>
> I believe i am missing or misinterpreting with other files.
>
> Kindly suggest.
> M.P.
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--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Thu Jul 20 2017 - 06:30:05 PDT
