Thank you, Hai and Bill!
I will upgrade to Ambertools17.
The export commands worked and I am able to run mdout_analyzer.py.
Best, Kristin
-----Original Message-----
From: Hai Nguyen [mailto:nhai.qn.gmail.com]
Sent: Wednesday, July 12, 2017 7:06 PM
To: AMBER Mailing List <amber.ambermd.org>
Subject: Re: [AMBER] Problem with running mdout_analyzer.py
I think this was fixed in ambertools 17
https://urldefense.proofpoint.com/v2/url?u=http-3A__archive.ambermd.org_201609_0415.html&d=DwICAg&c=7MSSWy9Bs2yocjNQzurxOQ&r=rDr-VDoXCKpr5ouXXYSZkHF6q5gU19w8m7W8WZccZ7U&m=gNpmlp0JZCqzdGU58EMVL2si8D0Kc6_xDioU3yZA9SU&s=a-oXtjKpcuqsKTvqBus6PHqR1HdqS4HUfgFtg6KLedE&e=
Can you upgrade?
Hai
On Wed, Jul 12, 2017 at 6:55 PM Krantzman, Kristin D <KrantzmanK.cofc.edu>
wrote:
> Hi Bill,
> Python is automatically installed when I type "make install" with
> AmberTools16. I do not know how to find the configuration file that
> has the error.
> Kristin
>
> -----Original Message-----
> From: Bill Ross [mailto:ross.cgl.ucsf.edu]
> Sent: Wednesday, July 12, 2017 6:45 PM
> To: amber.ambermd.org
> Subject: Re: [AMBER] Problem with running mdout_analyzer.py
>
> Correction - not a broken install, but a broken config that is
> concatenating names instead of choosing one.
>
> Bill
>
>
> On 7/12/17 3:43 PM, Bill Ross wrote:
> > > /opt/anaconda1anaconda2anaconda3/lib/tcl8.5
> >
> > That path sure looks like a broken install, but I don't know
> > anything about anaconda.
> >
> > Bill
> >
> > On 7/12/17 3:40 PM, Krantzman, Kristin D wrote:
> >> Greetings AMBER users,
> >> I am trying to run mdout_analyzer.py and get the following error:
> >> Traceback (most recent call last):
> >> File "./mdout_analyzer.py", line 48, in <module>
> >> root = Tk()
> >> File
> "/usr/local/amber16/miniconda/lib/python2.7/lib-tk/Tkinter.py", line
> 1820, in __init__
> >> self.tk = _tkinter.create(screenName, baseName, className,
> >> interactive, wantobjects, useTk, sync, use)
> >> _tkinter.TclError: Can't find a usable init.tcl in the following
> directories:
> >> /opt/anaconda1anaconda2anaconda3/lib/tcl8.5
> >> /usr/local/amber16/lib/tcl8.5 /usr/local/lib/tcl8.5
> /usr/local/amber16/library /usr/local/library
> /usr/local/tcl8.5.18/library /usr/tcl8.5.18/library I reinstalled tcl,
> I still get this error. Could you help with this?
> >> Best, Kristin
> >>
> >>
> >> This probably means that Tcl wasn't installed properly.
> >> Kristin D. Krantzman
> >> Professor, Department of Chemistry and Biochemistry College of
> >> Charleston Charleston, SC 29424
> >> (843) 953-3378
> >>
> >> _______________________________________________
> >> AMBER mailing list
> >> AMBER.ambermd.org
> >> https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.ambermd.o
> >> rg
> >> _mailman_listinfo_amber&d=DwICAg&c=7MSSWy9Bs2yocjNQzurxOQ&r=rDr-VDo
> >> XC
> >> Kpr5ouXXYSZkHF6q5gU19w8m7W8WZccZ7U&m=05GA69kYpADyAfYrZgotQ_jPUCJfvr
> >> w7 ZdtuDC7nbNI&s=v8nAsRTANLujksAhkfYwDGyLppXkweYL1R6TmLUC-7w&e=
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.ambermd.or
> > g_
> > mailman_listinfo_amber&d=DwICAg&c=7MSSWy9Bs2yocjNQzurxOQ&r=rDr-VDoXC
> > Kp
> > r5ouXXYSZkHF6q5gU19w8m7W8WZccZ7U&m=05GA69kYpADyAfYrZgotQ_jPUCJfvrw7Z
> > dt uDC7nbNI&s=v8nAsRTANLujksAhkfYwDGyLppXkweYL1R6TmLUC-7w&e=
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
>
> https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.ambermd.org_
> mailman_listinfo_amber&d=DwICAg&c=7MSSWy9Bs2yocjNQzurxOQ&r=rDr-VDoXCKp
> r5ouXXYSZkHF6q5gU19w8m7W8WZccZ7U&m=05GA69kYpADyAfYrZgotQ_jPUCJfvrw7Zdt
> uDC7nbNI&s=v8nAsRTANLujksAhkfYwDGyLppXkweYL1R6TmLUC-7w&e=
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.ambermd.org_
> mailman_listinfo_amber&d=DwICAg&c=7MSSWy9Bs2yocjNQzurxOQ&r=rDr-VDoXCKp
> r5ouXXYSZkHF6q5gU19w8m7W8WZccZ7U&m=gNpmlp0JZCqzdGU58EMVL2si8D0Kc6_xDio
> U3yZA9SU&s=OJQOCPBuSUUEWEL3eMiwjdACU5x6jme_PeFsKwpnffA&e=
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.ambermd.org_mailman_listinfo_amber&d=DwICAg&c=7MSSWy9Bs2yocjNQzurxOQ&r=rDr-VDoXCKpr5ouXXYSZkHF6q5gU19w8m7W8WZccZ7U&m=gNpmlp0JZCqzdGU58EMVL2si8D0Kc6_xDioU3yZA9SU&s=OJQOCPBuSUUEWEL3eMiwjdACU5x6jme_PeFsKwpnffA&e=
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jul 12 2017 - 16:30:05 PDT
