Hello Michael,
Here is the link for tutorial by Jason Swails and T. Dwight McGee Jr.
http://ambermd.org/tutorials/advanced/tutorial18/
Best wishes,
Monsurat.
On Thu, Jun 29, 2017 at 11:17 AM, Michael Shokhen <michael.shokhen.biu.ac.il
> wrote:
> Dear Amber experts,
>
> I have Amber16 and Amber Tools16.
> I need to simulate by constant pH MD complex of protein
> with ligands containing phosphonic and phosphate
> functional groups like structural examples presented in figure below.
> Unfortunately I didn’t find in amber documents and tutorials how to prepare
> for constant pH MD input files containing such functional groups.
> Your help highly appreciated.
>
> Thank you,
> Michael
>
> [cid:5878e43b-68e1-447c-9aa4-eb0655daf19e]
>
>
>
>
>
>
>
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Received on Thu Jun 29 2017 - 03:00:04 PDT
