Hi,
Which version of AmberTools are you using? Can you send me your
topology and coordinates files off-list so I can try to reproduce?
Thanks.
-Dan
On Wed, Jun 28, 2017 at 8:16 AM, Jag Silwal <jagsilwal.gmail.com> wrote:
> Dear all,
>
> I always use h++ program to process my PDB before simulation and I use
> ambpdb to convert top and crd file from h++ to create new PDB for
> simulation. I never had any problem until now. The protein complex I am
> trying to process has four chains with total of 473 amino acid. I processed
> through h++ without any problem. But when I use ambpdb -p top -c crd >
> final.pdb, I get segmentation fault, core dumped message.
>
> Any idea on how to proceed on this? Also, if you could suggest few other
> sites/program that helps me to process PDB (like protonation state, flip
> and all that) I would be very grateful.
>
> Thank you
>
> Jag
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--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Wed Jun 28 2017 - 08:30:02 PDT
