Hello,
âRecently, I use mm_pbsa.pl program for alanine scanning. But I met
some troubles when generating snapshots with "AS = 1". It is successful when
the mutated residue is LYS or CYS. But I can't get correct atom numbers when
the mutated residue is PRO. When the parameter "MUTATE_ATOM1" set to CG and
parameter "MUTATE_ATOM2" set to 0, the atom numbers lack 3.When the
parameter "MUTATE_ATOM1" set to CG and parameter "MUTATE_ATOM2" set to CD,
the atom numbers lack 5.
So please give me some suggestions for values of parameter
"MUTATE_ATOM1", "MUTATE_ATOM2", "MUTATE_KEEP" and "MUTATE_REFERENCE". Thank
you!
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Received on Mon Jun 26 2017 - 21:00:03 PDT
