Re: [AMBER] how heme force field combine with amber 99 ff

From: Rana Rehan Khalid <rrkhalid.umich.edu>
Date: Mon, 26 Jun 2017 22:03:23 -0400

Is it work for heme Fe-----o2, and heme fe----NO bonds??

On Jun 26, 2017 9:24 PM, "Elvis Martis" <elvis.martis.bcp.edu.in> wrote:

> Hi,
>
> In the latest version of Ambertools, all necessary files (prepin and
> frcmod) to work with Heme-containing systems are given. Consider upgrading
> to Ambertools17.
>
>
> Best Regards
>
> [photo]
>
>
>
> Elvis Martis
> Ph.D. Student (Computational Chemistry)
> at Bombay College of Pharmacy
>
>
> A Kalina, Santacruz [E], Mumbai 400098, INDIA
> W www.elvismartis.in<https://webapp.wisestamp.com/www.elvismartis.in>
> Skype. adrian_elvis12<https://webapp.wisestamp.com/#>
>
>
> [https://ci3.googleusercontent.com/proxy/P0F8-p0kwxKdscp6zsT-
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>
>
>
> ________________________________
> From: Rana Rehan Khalid <rrkhalid.umich.edu>
> Sent: 27 June 2017 02:14:56
> To: amber.ambermd.org
> Subject: [AMBER] how heme force field combine with amber 99 ff
>
> Hi everyone my protein consist of heme FE ----O2 ligand i have parameter
> file .prm for heme fe bonded type with O2 how i can use this separate heme
> file for fe--02 bond and merge it to rest of protein file. or can i merge
> it to amber99 ff if yes then how so in that way complex can be study easily
> rather then i deal with the heme and protein separately and then merge
> which method i can use.
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Received on Mon Jun 26 2017 - 19:30:02 PDT
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