hi, you can try either
- install binary distribution
- If you already installed suggested gfortran (amber website), you can
switch to GNU compiler
export CC=/usr/local/gfortran/bin/gcc
export CXX=/usr/local/gfortran/bin/g++
./configure gnu
(or set CC and CXX to your installed GNU compiler)
.Dave: I got similar issue with tleap, macos+clang on my mac for amber-dev
too (reported).
Hai
On Wed, Jun 21, 2017 at 9:53 AM, Xichong Liu <xichongl.princeton.edu> wrote:
> Hi David:
>
> I used ./configure clang -macAccelerate for the configure script during
> the installation. “Which gcc” gives “/usr/bin/gcc” and “gcc -v” gives:
>
> Configured with: --prefix=/Library/Developer/CommandLineTools/usr
> --with-gxx-include-dir=/usr/include/c++/4.2.1
> Apple LLVM version 8.1.0 (clang-802.0.42)
> Target: x86_64-apple-darwin16.6.0
> Thread model: posix
> InstalledDir: /Library/Developer/CommandLineTools/usr/bin
>
> After running configure with -debug option, the same error messages
> remained and no new information was generated. I’m not sure if this is
> specific for AmberTools17 because it’s the only one I have installed. I
> could try using a different version later. The MacOS I’m using is Sierra
> 10.12.5.
>
> Thanks for the help!
>
> Andy Liu
>
>
> > On Jun 21, 2017, at 2:45 PM, David A Case <david.case.rutgers.edu>
> wrote:
> >
> > On Wed, Jun 21, 2017, Xichong Liu wrote:
> >>
> >> I have recently installed AmberTools17 on my personal MacBook and ran
> >> into some issues with Leap.
> >
> > Thanks for the report. What options did you give to the configure
> script?
> > What is the result of the commands "which gcc" and "gcc -v"? Finally,
> > what version of MacOS are you using?
> >
> > This sounds like a tough thing to debug until someone else has a machine
> > on which the tleap tests fail in this manner. You can try this:
> >
> > Re-run configure with the "-debug" option; recompile; then see what
> happens
> > on one of the tleap test cases. It may work then; or you may get more
> > information; or you may not learn anything useful.
> >
> > (Aside: do you know if this is specific to AmberTools17? That is, have
> > you run an earlier version of AmberTools using this machine and
> compilers?)
> >
> > ...dac
> >
> >
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
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Received on Wed Jun 21 2017 - 08:00:03 PDT
