Hello, Kristin,
I've also had similar problems when using export CUDA_VISIBLE_DEVICS=1. It
seems the gpu id you specified does not match the one in your system. I
noticed for instance that when I specified device 0, it corresponded to gpu
1. The number matching is off.
I did not find a solution to this problem.
On Fri, Jun 16, 2017 at 2:48 PM, Krantzman, Kristin D <KrantzmanK.cofc.edu>
wrote:
> [image: Boxbe] <https://www.boxbe.com/overview> This message is eligible
> for Automatic Cleanup! (KrantzmanK.cofc.edu) Add cleanup rule
> <https://www.boxbe.com/popup?url=https%3A%2F%2Fwww.boxbe.com%2Fcleanup%3Fkey%3Djp%252F1VxEJUlMvI10P4AvIhnaNjWZT%252BCcmNQrUNu7W2Gw%253D%26token%3D%252Bk%252BXVkLivG19eMrWyIlANAm5HdfA%252FeYIsY%252F828t%252Biv73UX23rwR6pjgCcrKf2iVnD1FDbQvFRvTo%252FT57%252BxPI3rlU6Ud9AZGrLQnM%252BN40hjgE1GVO1IYzzasA3%252B0DXMnw7Pm8jlQI%252FYU%253D&tc_serial=30936656575&tc_rand=786610339&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001>
> | More info
> <http://blog.boxbe.com/general/boxbe-automatic-cleanup?tc_serial=30936656575&tc_rand=786610339&utm_source=stf&utm_medium=email&utm_campaign=ANNO_CLEANUP_ADD&utm_content=001>
>
> Greetings Amber Users,
> I am trying to use pmemd.CUDA on different GPU processors using the export
> CUDA_VISIBLE_DEVICES command.
> However, when I type export CUDA_VISIBLE_DEVICES="1" and then try to
> execute pmemd.cuda, I get the error that all CUDA-capable devices are busy
> are unavailable. When I type nvidia-smi, it seems that only one of the
> three GPUS is in use. Does anyone have experience with solving this
> problem?
> Thank you in advance.
> Best, Kristin
> Kristin D. Krantzman
> Professor, Department of Chemistry and Biochemistry
> College of Charleston
> Charleston, SC 29424
> (843) 953-3378
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
>
--
Jerrano L. Bowleg
PhD Student
Department of Chemistry
Gwaltney Lab- Hand Lab 1126
Mississippi State University
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jun 16 2017 - 13:30:03 PDT
