The periodicity for the electric field is for how often it fluctuates not for the periodicity of the simulation box. Currently there's no way to set periodicity in certain directions. To turn off x and y directions for your efield just set efx=0 and efy=0.
Charlie
________________________________
From: Jianing Song <sjn_sk.hotmail.com>
Sent: Wednesday, June 7, 2017 12:49:45 AM
To: amber.ambermd.org
Subject: [AMBER] External electric fields support for GPU and how to set the parameters in mdin files?
Dear all,
Would you please tell me whether AMBER16 supports external electric fields in GPU now?
I want to simulate a membrane protein located in a lipid bilayer, and try to add external electric field only to the Z axis. Then the periodicity of the system should be only set to X and Y axis, not Z axis, Is this right?
If right, would you please tell me how to set the parameters efphase and effreq in the mdin files?
Thanks very much.
Jianing
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Received on Tue Jun 06 2017 - 23:30:02 PDT
