Hi,
There is nothing wrong in this. GAFF has all the parameters for your ligand.
Go ahead and load that in leap and see if you can save the lig.prmtop and lig.inpcrd.
If yes, then there is no problem at all.
Best Regards
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Elvis Martis
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at Bombay College of Pharmacy
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________________________________
From: Vishal Nemaysh <vishal.bioinfotech.gmail.com>
Sent: 06 June 2017 21:57:45
To: AMBER Mailing List
Subject: [AMBER] Regarding empty lig.frcmod file
Dear Amber Users,
I have used antechamber module of AMBER 12 for ligand parameter files
preparation for MD simulation and I have facing the problem in the*
lig.frcmod* file generation, which is empty and there is no any parameter
for ligand its just showing the following text
remark goes here
MASS
BOND
ANGLE
DIHE
IMPROPER
NONBON
I think rest of the files are generated successfully. Please kindly suggest
me how can I resolve this problem.
I have attached all the files which I have generated including *lig.frcmod *for
your reference.
Thanking you in advance
Regards....
--
*Vishal Nemaysh, PhD*
*Neuropharmaceutical Chemistry Group,*
*Dr. B. R. Ambedkar Center for Biomedical Research,*
*University of Delhi, Delhi-110007, INDIA*
*Email: vishal.bioinfotech.gmail.com <vishal.bioinfotech.gmail.com>*
*LinkedIn: vishalnemaysh.hotmail.com <vishalnemaysh.hotmail.com>*
*Mobile: 91+8447581401, 91+9650736653*
*======================================*
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Received on Tue Jun 06 2017 - 10:00:02 PDT
