Hi Nikolay!
On Tue, Jun 6, 2017 at 5:02 AM, Nikolay N. Kuzmich <nnkuzmich.gmail.com>
wrote:
> Is it possible to simulate domain of a protein molecule
> (ligand-binding domain, for instance) -
>
Yes. Why not ?
> I mean,does it make sense and how critically should one consider the
> results?
>
Make all senses. I believe the results depend of your system. I had good
results using only ligand-binding domain.
> How distant will they be from the real world, or to be exact, from the
> results
> if the whole protein had been simulated?
>
If you have the opportunity, we should try to simulate both "models":
ligand-binding domain and full protein (if you have it). By the way,
sometimes we do not have the full protein on PDB.
HTH
---
Marcos S.A.
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Received on Tue Jun 06 2017 - 07:00:03 PDT
