Re: [AMBER] AmberTools17: test of mpi configuration with pnetcdf failed on Mac OS X 10.10

From: Mooers, Blaine H.M. (HSC) <"Mooers,>
Date: Wed, 26 Apr 2017 15:06:50 +0000

Sorry for the delay.

Good question because I have both mpich and openmpi installed in /opt/local/bin

>mpiexec --version
returns
>mpiexec (OpenRTE) 1.10.3
so I used openmpi.




Best regards,

Blaine

Blaine Mooers, Ph.D.
Assistant Professor
Department of Biochemistry and Molecular Biology, College of Medicine
University of Oklahoma Health Sciences Center
975 NE 10th Street, BRC 466
Oklahoma City, OK 73104-5419
Faculty webpage X-ray lab (LBSF) Molecular Graphics Links Small Angle Scattering
office: (405) 271-8300 lab: (405) 271-8313 e-mail: blaine-mooers.ouhsc.edu

________________________________________
From: David Case [david.case.rutgers.edu]
Sent: Sunday, April 23, 2017 4:57 PM
To: AMBER Mailing List
Subject: Re: [AMBER] AmberTools17: test of mpi configuration with pnetcdf failed on Mac OS X 10.10

On Sun, Apr 23, 2017, Mooers, Blaine H.M. (HSC) wrote:

> Right, I am a devotee of macports ...

But there is more than one mpi option in macports (openmpi and mpich, perhaps
more). If you know which macports mpi package you installed, that would be a
help. (In particular, we've had issues with openmpi in other contexts.)

...thx...dac

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
https://urldefense.proofpoint.com/v2/url?u=http-3A__lists.ambermd.org_mailman_listinfo_amber&d=DwICAg&c=qRnFByZajCb3ogDwk-HidsbrxD-31vTsTBEIa6TCCEk&r=39ovrj_9gtbpqLqHj52qObHez22uGBx1oHrj21rIdII&m=_va2Uwh_cc7M_i8GaygRasMd4OLz2hqlNNIwrGOLC8s&s=bOesGun3utu5OF4jpPQNJafdZlORhavqciAGMvwLNys&e=

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Apr 26 2017 - 08:30:02 PDT
Custom Search