you need to add
source $AMBERHOME/amber.sh to your .bash_profile.
(You said you did set AMBERHOME and PATH but you did not say you set
"LD_LIBRARY_PATH")
The test passed because you did source amber.sh
Hai
On Thu, Apr 20, 2017 at 10:13 PM, Khatcharin Siriwong <
khatcharin.s.gmail.com> wrote:
> Dear All,
>
> I have installed AmberTools17 on Ubuntu with bash shell.
> - $AMBERHOME was set, and "source amber.sh" was done after "./configure
> gnu"
> - Everything was fine for make install and make test (there was no any
> error and failed, for both serial and parallel installation)
> - there are libsander.so and libnetcdf.so in $AMBERHOME/lib
> - I also set AMBERHOME and PATH in file ".bash_profile" as same as other
> softwares (no .bashrc file)
>
> But when I run cpptraj or cpptraj.MPI, I got message
>
> "cpptraj: error while loading shared libraries: libsander.so: cannot open
> shared object file: No such file or directory"
>
> also
>
> "cpptraj.MPI: error while loading shared libraries: libnetcdf.so.7: cannot
> open shared object file: No such file or directory"
>
> I also installed on CentOS, but only cpptraj.MPI works properly.
>
> Please give me any suggestion. Thank you very much in advance for your
> kindness.
>
> Best Regards,
> Khatcharin
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Apr 20 2017 - 19:30:03 PDT
