[AMBER] HEME-CYS

From: Thakur, Abhishek <axt651.miami.edu>
Date: Mon, 17 Apr 2017 16:45:38 +0000

Hi

I am having a system in which HEME FE is bounded to Cys S.

When I am using HEME amber parameters and manually giving bond between FE and S, I am getting an error



Could not find bond parameter for: SH - FE
Building angle parameters.
Could not find angle parameter: SH - FE - NP
Could not find angle parameter: SH - FE - NO
Could not find angle parameter: SH - FE - NP
Could not find angle parameter: SH - FE - NO
Could not find angle parameter: CT - SH - FE
Building proper torsion parameters.
 ** No torsion terms for CT-SH-FE-NP
 ** No torsion terms for CT-SH-FE-NO
 ** No torsion terms for CT-SH-FE-NP
 ** No torsion terms for CT-SH-FE-NO


How should I solve this problem.




with regards,

-AT
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Received on Mon Apr 17 2017 - 10:00:02 PDT
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