[AMBER] Format error in frcmod file of HEME

From: Thakur, Abhishek <axt651.miami.edu>
Date: Fri, 14 Apr 2017 16:42:46 +0000

Hi

I am trying to use HEME amber parameters but it is giving me format error



> loadamberparams HEME.frcmod
Loading parameters: ./HEME.frcmod
Reading force field modification type file (frcmod)
Reading title:
MASS
Unknown keyword: NP 14.01
 in parameter file. Perhaps a format error?
Unknown keyword: NO 14.01
 in parameter file. Perhaps a format error?
Unknown keyword: CY 12.0
 in parameter file. Perhaps a format error?
Unknown keyword: CX 12.0
 in parameter file. Perhaps a format error?
Unknown keyword: CD 12.0
 in parameter file. Perhaps a format error?
Unknown keyword: FE 55.85
 in parameter file. Perhaps a format error?
Unknown keyword: LC 12.01
 in parameter file. Perhaps a format error?
Unknown keyword: LO 16.00
 in parameter file. Perhaps a format error?
Unknown keyword:
 in parameter file. Perhaps a format error?
Unknown keyword: NB-FE-NO? in parameter file. Perhaps a format error?
Unknown keyword: NB-FE-LC ? in parameter file. Perhaps a format error?
Unknown keyword: NB-FE-LO ? in parameter file. Perhaps a format error?
Unknown keyword: NP-FE-NP ? in parameter file. Perhaps a format error?
Unknown keyword: NO-FE-NO ? in parameter file. Perhaps a format error?
Unknown keyword: NO-FE-NP? in parameter file. Perhaps a format error?
Unknown keyword: NO-FE-LC? in parameter file. Perhaps a format error?
Unknown keyword: NO-FE-LO? in parameter file. Perhaps a format error?
Unknown keyword: NP-FE-LC? in parameter file. Perhaps a format error?
Unknown keyword: NP-FE-LO? in parameter file. Perhaps a format error?
Unknown keyword: FE-NP-CC? in parameter file. Perhaps a format error?
Unknown keyword: FE-NO-CC? in parameter file. Perhaps a format error?
Unknown keyword: NO-CC-CB? in parameter file. Perhaps a format error?
Unknown keyword: NP-CC-CB? in parameter file. Perhaps a format error?
Unknown keyword: NO-CC-CD? in parameter file. Perhaps a format error?
Unknown keyword: NP-CC-CD? in parameter file. Perhaps a format error?
Unknown keyword: CC-NP-CC? in parameter file. Perhaps a format error?
Unknown keyword: CC-NO-CC? in parameter file. Perhaps a format error?
Unknown keyword: CC-CB-CB? in parameter file. Perhaps a format error?
Unknown keyword: CC-CD-CC? in parameter file. Perhaps a format error?
Unknown keyword: CB-CC-CD? in parameter file. Perhaps a format error?
Unknown keyword: CC-CB-CT? in parameter file. Perhaps a format error?
Unknown keyword: CB-CB-CT? in parameter file. Perhaps a format error?
Unknown keyword: CC-CD-HC? in parameter file. Perhaps a format error?
Unknown keyword: CR-NB-FE ? in parameter file. Perhaps a format error?
Unknown keyword: CV-NB-FE ? in parameter file. Perhaps a format error?
Unknown keyword: CB-CT-HC? in parameter file. Perhaps a format error?
Unknown keyword: CB-CB-CY? in parameter file. Perhaps a format error?
Unknown keyword: CB-CY-HC? in parameter file. Perhaps a format error?
Unknown keyword: CB-CY-CX? in parameter file. Perhaps a format error?
Unknown keyword: CY-CX-HC? in parameter file. Perhaps a format error?
Unknown keyword: CC-CB-CY? in parameter file. Perhaps a format error?
Unknown keyword: CX-CY-HC? in parameter file. Perhaps a format error?
Unknown keyword: CB-CT-CT? in parameter file. Perhaps a format error?
Unknown keyword: HC-CX-HC? in parameter file. Perhaps a format error?
Unknown keyword: FE-LC-LO? in parameter file. Perhaps a format error?
Unknown keyword: FE-LO-LO? in parameter file. Perhaps a format error?
Unknown keyword: LP-SH-LP ? in parameter file. Perhaps a format error?
Unknown keyword:
 in parameter file. Perhaps a format error?
Unknown keyword:
 in parameter file. Perhaps a format error?
Unknown keyword: X -X -CB-X in parameter file. Perhaps a format error?
Unknown keyword: X -X -NP-X in parameter file. Perhaps a format error?
Unknown keyword: X -X -NO-X in parameter file. Perhaps a format error?
Unknown keyword:
 in parameter file. Perhaps a format error?
Unknown keyword:
 in parameter file. Perhaps a format error?
Unknown keyword:
 in parameter file. Perhaps a format error?
!FATAL ERROR----------------------------------------
!FATAL: In file [varArray.c], line 106
!FATAL: Message: PVarArrayIndex: VARARRAY is NULL!
!ABORTING.




I am attaching the file, if anyone can help me in correcting the format.




with regards,

-AT


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Received on Fri Apr 14 2017 - 10:00:02 PDT
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