If I have a reference DNA oligomer like:
CGCGAATTCGCG
And want to do an rmsd against a trajectory of a DNA oiligomer like:
GCGCTTAAGCGC
Will rmsd reorient the reference (or trajectory) so that the sequences are properly compared, i.e. the AATT sequence in the reference is compared to the TTAA sequence in the trajectory where the A's and T's are compared against A's and T's instead of T's being compared to A's?
Thanks.
Jim
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Received on Wed Apr 12 2017 - 11:00:03 PDT
