Dear amber;
I face a problem when I install amber.
After I have finished isntall amber14 on parallel. I found no MMPBSA.py.mpi. And it did not report error when i install amber . I also install the mpi4.py.But It did not work.I install the amber on ubuntu 16.04. I really can not solve it.
Here are the commands in /amber14/bin/
pzhou.pzhou-X9SRA-X9SRA-3-Invalid-entry-length-16-Fixed-up-to-11:~/baizy/software/amber14/bin$ ls
acdoctor matmerge pmemd.MPI
addles matmul prep2xml
add_pdb MCPB prepgen
AddToBox mdgx process_mdout.perl
am1bcc mdgx.MPI process_minout.perl
ambmask mdnab PropPDB
ambpdb mdout2pymbar.pl protonator
antechamber mdoutanalyzer pymdpbsa
ante-MMPBSA.py mdout_analyzer.py pytleap
atomtype minab reduce
bondtype mmE residuegen
capActiveSite MMPBSA_mods resp
chamber mm_pbsa_nabnmode respgen
charmmgen mm_pbsa.pl rism1d
charmmlipid2amber.x MMPBSA.py rism3d.snglpnt
ChBox mmpbsa_py_energy sander
chemistry mmpbsa_py_nabnmode sander.LES
compat24.py mm_pbsa_statistics.pl sander.LES.MPI
compat24.pyc molsurf sander.MPI
cphstats mpinab senergy
cpinutil.py mpinab2c sequenceAligner
cpinutils MTKppConstants sgldinfo.sh
cpptraj nab sgldwt.sh
cpptraj.MPI nab2c softcore_setup.py
cpptraj.OMP nc-config sqm
database nccopy stats
elsize ncdump stdLib2Sdf
espgen ncgen superimposer
fantasian ncgen3 sviol
FEW.pl new2oldparm sviol2
ffgbsa new_crd_to_dyn teLeap
fftw-wisdom new_to_old_crd tinker_to_amber
fftw-wisdom-to-conf nf-config tleap
fix_new_inpcrd_vel nmode transform
frcmod2xml paramfit translate
func parmcal tss_init
hcp_getpdb parmchk tss_main
hybrid parmchk2 tss_next
makeANG_RST parmed.py ucpp
makeCHIR_RST ParmedTools UnitCell
make_crd_hg pbsa xaLeap
makeDIP_RST.dna pdb4amber xleap
makeDIP_RST.protein pdbSearcher xparmed.py
makeDIST_RST pmemd yacc
matextract pmemd.amoeba
matgen pmemd.amoeba.MPI
Thanks in advance.
ALL the best
Bai Zhengya
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Received on Tue Apr 11 2017 - 01:00:03 PDT
