Re: [AMBER] How to distinguish between water molecules?

From: David A Case <david.case.rutgers.edu>
Date: Wed, 5 Apr 2017 07:55:30 -0400

On Wed, Apr 05, 2017, Karolina MitusiƄska (Markowska) wrote:
>
> thanks for your response.
> I would like to have two (or more) residues, named for example CRY for
> crystal water and WAT for water from the water box, both treated by pmemd
> like water residues.

Just to restate what Hannes said, in different words: just note down the
residue numbers that correspond to the "crystal" waters, and use residue
numbers rather than names to follow their behavior during a simulation.

....good luck...dac


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Received on Wed Apr 05 2017 - 05:00:04 PDT
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