Hi Wu,
have a look at this:
http://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/12042.html
On 03/30/2017 01:04 PM, 吴萌 wrote:
> Dear All,
>
> I am running a membrane protein MD simulation with Amber14. When load my trajectory in VMD(version 1.9.3), I found the display of water molecules is adnormal: there shown the third bonds between the two hydrogen atoms. I have tried diffrernt drawing method, but the problem is still there. Could it be my water model(tip3p I used) problem or the parameters? If so, how can I fix it.
>
> Any suggestions would be greatly appreciated.Thank you in advance!
>
> Sincerely,
> Wu Meng
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--
M.Sc. Andreas Tosstorff
Lehrstuhl für Pharmazeutische Technologie und Biopharmazie
Department Pharmazie
LMU München
Butenandtstr. 5-13 ( Haus B)
81377 München
Germany
Tel.: +49 89 2180 77059
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Received on Thu Mar 30 2017 - 04:30:03 PDT
