Dear All,
I am running a membrane protein MD simulation with Amber14. When load my trajectory in VMD(version 1.9.3), I found the display of water molecules is adnormal: there shown the third bonds between the two hydrogen atoms. I have tried diffrernt drawing method, but the problem is still there. Could it be my water model(tip3p I used) problem or the parameters? If so, how can I fix it.
Any suggestions would be greatly appreciated.Thank you in advance!
Sincerely,
Wu Meng
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Received on Thu Mar 30 2017 - 04:30:02 PDT
