Date: Thu, 16 Mar 2017 10:36:26 +0000
Dear Amber users,
I have a protein RNA complex where I want to calculate the distance from a specific amino acid to all nucleotides:
Nucleotide residue numbers: 319-346
Amino acid: Lysine 214
I use the following command:
distance C319-U346-ALL-LYS214-NZ :319-346.* :214.NZ out C319-346-ALL_LYS214-NZ.agr
This produces one plot with one distance graph:
Is this the minimum distance ?
Can I show all distances (would produce hundreds of plots ?)
regards
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Dr Khushwant Sidhu
Senior Experimental Officer / I. T. Professional
Department of Molecular and Cell Biology,
1/61 Henry Wellcome Building , University of Leicester,
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Leicester,
LE1 7RH
T: 0116 229 7237
E: k.sidhu.le.ac.uk
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