Re: [AMBER] Sander python API problem (?)

From: Nhai <nhai.qn.gmail.com>
Date: Thu, 23 Feb 2017 11:10:14 -0500

> On Feb 23, 2017, at 10:54 AM, Elisa Pieri <elisa.pieri90.gmail.com> wrote:
>
> So..I solved two problems:
>


> -for some reason, cpptraj is adding two useless numbers to the rst7, which
> makes it unreadable. Nothing that sed cannot handle, I guess.

? Why do you think it's useless? If vmd can not read it, it's vmd problem, not ours.

> -"coordinates" has to be used instead of "coords" as attribute. The manual
> would need an extensive debug.

Thx. I will update the manual.

Hai
>
> Now it is working on my computer, we can try it tomorrow on yours!
>
> Elisa
>
> On Thu, Feb 23, 2017 at 4:43 PM, Elisa Pieri <elisa.pieri90.gmail.com>
> wrote:
>
>> Uh, thanks! Easier than expected! I took the main structure from the
>> manual examples, I don't know if the same correction should be applied to
>> the manual..
>> BTW, I discovered that the RST7 was unreadable for VMD just because on
>> line 2 cpptraj adds two numbers (energy and force?) after the number of
>> atoms; another possible bug to be fixed?
>>
>> Thank you!
>> Elisa
>>
>>> On Thu, Feb 23, 2017 at 4:36 PM, Nhai <nhai.qn.gmail.com> wrote:
>>>
>>> Hi
>>>
>>> Change coords to coordinates.
>>>
>>> Hai Nguyen
>>>
>>>> On Feb 23, 2017, at 10:05 AM, Elisa Pieri <elisa.pieri90.gmail.com>
>>> wrote:
>>>>
>>>> coords
>>>
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>>
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Received on Thu Feb 23 2017 - 08:30:03 PST
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