Thanks, Adrian and Bill.
Indeed, I can find the type of atoms by Guess view software and "atom list"
command, but in order to find the Amber force field parameters I already
used Cornell paper and my problem is only with these parameters:
CA-N3
CA-CA-N3
CA-N3-H
CA-CA-N3-H
CA-CA-CA-N3
However, I try to install antechamber but I think It only can be installed
on Linux? because I try to follow
http://ambermd.org/antechamber/download.html but the mentioned syntaxes on
this web page do not work in cmd in win 8. Is it true? Is there any easy
way to determine these parameters because there are not many atom types in
my simulation which is done in Lammps software? (I already try to use
paratool in VMDsoftware but I have some problems with it.)
Thanks a lot for your help.
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Received on Thu Feb 23 2017 - 04:30:04 PST
