[AMBER] frequency contact maps

From: <antonio.coluccia.uniroma1.it>
Date: Wed, 15 Feb 2017 15:28:05 +0100

Dear all,
  I am in trouble with contact map
i have done some simulations of my protein embedded into water and a
organic cosolvents (20%) octaedron boxes.
At this point i would like to generate a 3D map of frequency
interaction/contact between the protein and the organic solvent molecules.
Is it possible by cpptraj? I read something about nativecontact but my
concerns are about the output, is it possible to have 3d maps by

Thank you very much,
any help will be really appreciate.


Antonio Coluccia, Ph.D.
Department of Chemistry and Drugs Tecnology
La Sapienza University
Rome 00185
Piazzale Aldo Moro 5
mobile: 00393406113351
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Received on Wed Feb 15 2017 - 07:00:03 PST
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