Hi,
Thanks for the report. This bug has been fixed in the latest version of
AmberTools 16 (released last April). I'd recommend updating to the latest
version of AmberTools for setting up simulations.
All the best,
Jason
On Tue, Feb 14, 2017 at 4:19 PM, Chase Zagorec-Marks <
chasezgrcmrks.gmail.com> wrote:
> Hello,
>
> I was trying to run the following command:
>
>
> cpinutil.py -p 11-mer-pH-exp.parm7 -resnames HIP GL4 AS4 -igb 2 -o
> 11-mer-pH-exp.cpin -op 11-mer-pH-exp-new.parm7
>
>
> and I received the following error line:
>
>
> Traceback (most recent call last):
> File "/uufs/chpc.utah.edu/sys/installdir/amber/amber15/bin/cpinutil.py",
> line 289, in <module>
> main(opt)
> File "/uufs/chpc.utah.edu/sys/installdir/amber/amber15/bin/cpinutil.py",
> line 256, in main
> changeradii(parm, 'mbondi2').execute()
> NameError: global name 'changeradii' is not defined
>
> When I contacted the Service Desk of the supercomputer I was trying to
> complete this task with, they noticed that the “r” in chageradii should be
> capitalized so that the function was named changeRadii(parm,
> ’mbondi2’).execute(). After changing the “r” to “R” the command ran to
> completion.
>
> Thanks,
> Chase Zagorec-Marks
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> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
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Received on Tue Feb 14 2017 - 20:00:03 PST
