Re: [AMBER] visualization problem

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Tue, 31 Jan 2017 12:22:10 -0500

Hi,

I think only version 1.9.3 of VMD supports reading the NetCDF restart
format. You can upgrade, or convert your NetCDF restart (e.g.
inpcrd.ncrst) to ASCII restart with cpptraj:

cpptraj -p myparm.parm7 -y inpcrd.ncrst -x inpcrd.rst7

Hope this helps,

-Dan

On Tue, Jan 31, 2017 at 11:09 AM, Albert <mailmd2011.gmail.com> wrote:
> Hello,
>
>
> I've loaded my sol.prmtop and sol.inpcrd file into VMD successfully. I
> can see my water box without any problem.
>
>
> However, when I try to load a .rst restart file or .mdcrd trajectory
> file to VMD, VMD always stacks with information:
>
> Info) rst7plugin) Title: CDF
>
> The system halted. I am just wondering how to solve the problem? I am
> using VMD 1.9.2
>
> Thanks a lot
>
> Albert
>
>
>
>
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-- 
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Tue Jan 31 2017 - 09:30:03 PST
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